collapseNodes - Collapse internal nodes with the same predicted sequence
Description¶
collapseNodes Node collapsing function.
Usage¶
collapseNodes(trees, tips = FALSE, check = TRUE)
Arguments¶
- trees
- a tibble of
airrCloneobjects, the output of getTrees - tips
- collapse tips to internal nodes? (experimental)
- check
- check that collapsed nodes are consistent with original tree
Value¶
A tibble with phylo objects that have had internal nodes collapsed.
Details¶
Use plotTrees(trees)[[1]] + geom_label(aes(label=node)) + geom_tippoint() to show node labels, and getSeq to return internal node sequences