buildPhylo - Wrapper for alakazam::buildPhylipLineage
Wrapper for alakazam::buildPhylipLineage
buildPhylo( clone, exec, temp_path = NULL, verbose = 0, rm_temp = TRUE, seq = "sequence", tree = NULL, onetree = TRUE )
- dnapars or dnaml executable
- path to temporary directory
- amount of rubbish to print
- remove temporary files?
- sequece column in
- fixed tree topology if desired (currently does nothing if specified)
- Only sample one tree if multiple found.
phylo object created by dnapars or dnaml with nodes attribute
containing reconstructed sequences.