- Immcantation Portal -
Overview of the Immcantation framework tools. Tutorials to analyze immune
- pRESTO -
Raw read assembly, quality control and UMI processing.
- Change-O -
V(D)J alignment standardization and clonal clustering.
- Alakazam -
V(D)J gene usage, repertoire diversity and
physicochemical property analysis.
- SHazaM -
Mutation profiling and selection strength quantification
physicochemical property analysis
- TIgGER -
Polymorphism detection and genotyping.
- SCOPer -
Spectral clustering of B cells into clonal lineages.
- Dowser -
Lineage reconstruction and analysis.