readLineages - Read in all trees from a lineages file
Description¶
Read in all trees from a lineages file
Usage¶
readLineages(
file,
states = NULL,
palette = NULL,
run_id = "",
quiet = TRUE,
append = NULL,
format = "nexus",
type = "jointpars"
)
Arguments¶
- file
- IgPhyML lineage file
- states
- states in parsimony model
- palette
- deprecated
- run_id
- id used for IgPhyML run
- quiet
- avoid printing rubbish on screen?
- append
- string appended to fasta files
- format
- format of input file with trees
- type
- Read in parsimony reconstructions or ancestral sequence reconstructions? “jointpars” reads in parsimony states, others read in sequences in internal nodes
Value¶
A list of phylo objects from file.