getSeq - Deprecated! Use getNodeSeq

Description¶

getSeq Sequence retrieval function.

Usage¶

getSeq(data, node, tree = NULL, clone = NULL, gaps = TRUE)

Arguments¶

data

a tibble of airrClone objects, the output of getTrees

node

numeric node in tree (see details)

tree

a phylo tree object containing node

clone

if tree not specified, supply clone ID in data

gaps

add IMGT gaps to output sequences?

Value¶

A vector with sequence for each locus at a specified node in tree.

See also¶

getTrees