getAllSeqs - Return all tip and internal node sequences

Description¶

getNodeSeq Sequence retrieval function.

Usage¶

getAllSeqs(data, imgt_gaps = TRUE)

Arguments¶

data

a tibble of airrClone objects with reconstructed trees, the output of getTrees

imgt_gaps

include a column of gapped sequences?

Value¶

A tibble with sequence information for each tip and internal node of a set of trees.

Details¶

Column names: clone_id = clone id node_id = name of node, either the sequence name if a tip or Node if internal node node = node number in tree. Tips are nodes 1:. locus = locus of sequence sequence = ungapped sequence, either observed for tips or reconstructed for internal nodes sequence_alignment = sequence with IMGT gaps (optional)

See also¶

getTrees getNodeSeq