dfToFasta - Write a fasta file of sequences readFasta reads a fasta file

Description¶

Write a fasta file of sequences readFasta reads a fasta file

Usage¶

dfToFasta(
df,
file,
id = "sequence_id",
seq = "sequence",
imgt_gaps = FALSE,
columns = NULL
)

Arguments¶

df

dataframe of sequences

file

FASTA file for output

id

Column name of sequence ids

seq

Column name of sequences

imgt_gaps

Keep IMGT gaps if present?

columns

vector of column names to append to sequence id

Value¶

File of FASTA formatted sequences