ExampleAirrTyCHE - Example AIRR database for TyCHE

Description

A small example database from simble.

Usage

ExampleAirrTyCHE

Format

A data.frame with the following AIRR style columns:

  • sequence_id: Sequence identifier
  • sequence_alignment: IMGT-gapped observed sequence.
  • germline_alignment: IMGT-gapped germline sequence.
  • v_call: V region allele assignments.
  • d_call: D region allele assignments.
  • j_call: J region allele assignments.
  • junction: Junction region sequence.
  • junction_length: Length of the junction region in nucleotides.
  • np1_length: Combined length of the N and P regions proximal to the V region.
  • np2_length: Combined length of the N and P regions proximal to the J region.
  • sample_time: Time point of the sample.
  • location: Location of tissue from which the sample was taken.
  • clone_id: Clonal group identifier.

References

  1. Pre-submission.