makeModelFile - Make a parsimony model file

Description

makeModelFile Filler

Usage

makeModelFile(file, states, constraints = NULL, exceptions = NULL)

Arguments

file
model file name to write.
states
vector of states to include in model.
constraints
constraints to add to model.
exceptions
vector of comma-separated states that are exceptions to constraints

Value

Name of model file

Details

Currently the only option for constraints is “irrev”, which forbids switches moving from left to right in the states vector.

See also

readModelFile, getTrees, findSwitches